Ovarian Cancer Example Dataframe

A processed dataframe derived from the VectraPolaris ovarian cancer dataset. It is a snapshot of 5 images from the HumanOvarianCancerVP() dataset in the VectraPolarisData package

Usage

ovarian_df

Format

A dataframe with x and y coordinates and marks indicating immune status.

cell_id

The ID of the current cell in the current sample/image

sample_id

The ID of the sample/image

x

X coordinate of the current cell

y

Y coordinate of the current cell

immune

A factor indicating whether the cell is immune or background

phenotype

A factor indicating the cell type (e.g., b cell, cytotoxic t cell, helper t cell, macrophage, tumor, other)

Source

Subset of HumanOvarianCancerVP() from the VectraPolarisData package.